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It can convert 2D (SDF) and 3D (PV) files to 3D (OBJ), as well as canonicalize molecular fragments (SMILES, InChI, CML). It uses the openChem tool for processing chemicals, and the Open Babel parser for protein structures (PDB) as well as coordinates of molecules (SDF, CDX, 3D PDB). The GUI supports annotation during conversions.
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